STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bxlBPutative exo-1,4-beta-xylosidase bxlB. (873 aa)    
Predicted Functional Partners:
xynB-0
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
    
  0.761
pgxB-1
Putative exopolygalacturonase B; Belongs to the glycosyl hydrolase 28 family.
    
  0.715
PGN1
Polygalacturonase.
    
  0.715
pgaX-2
Exopolygalacturonase X-2; Belongs to the glycosyl hydrolase 28 family.
    
  0.715
pgaX-1
Exopolygalacturonase X-1; Belongs to the glycosyl hydrolase 28 family.
    
  0.715
pgxB-2
Putative exopolygalacturonase B; Belongs to the glycosyl hydrolase 28 family.
    
  0.715
PG1
Endopolygalacturonase 1.
    
  0.715
pgaD
Putative endopolygalacturonase D.
    
  0.713
rgxB-2
Alpha-L-rhamnosidase rgxB.
    
  0.629
rgxB-1
Alpha-L-rhamnosidase rgxB; Belongs to the glycosyl hydrolase 28 family.
    
  0.629
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.