STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v004652Uncharacterized protein. (250 aa)    
Predicted Functional Partners:
rnh-201
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.753
GPDA
Glyceraldehyde-3-phosphate dehydrogenase.
     
 0.648
NUDT12
Peroxisomal NADH pyrophosphatase NUDT12.
   
  0.643
ndk1
Nucleoside diphosphate kinase.
     
 0.631
CTRI78_v009284
Putative thymidylate synthase.
  
 
 0.623
pgk1
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
  0.610
THYA
Thymidylate synthase.
    
 0.603
CTRI78_v000720
Single-stranded DNA-binding protein RIM1.
   
 
 0.574
CTRI78_v006546
Putative NAD kinase 2.
    
  0.543
UTR1-0
NAD(+) kinase.
    
  0.543
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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