STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YBT1-2ATP-dependent bile acid permease. (1505 aa)    
Predicted Functional Partners:
PEX29
Peroxisomal membrane protein PEX29.
 
 
    0.889
ubp3
Putative ubiquitin carboxyl-terminal hydrolase 3; Belongs to the peptidase C19 family.
    
  0.612
CTRI78_v009124
ABC transporter G family member.
    
0.609
afg2
ATPase family gene 2 protein; Belongs to the AAA ATPase family.
    
  0.566
cdc48
Cell division control protein 48; Belongs to the AAA ATPase family.
    
  0.566
yjoB
Putative ATPase YjoB.
 
  
  0.566
Derl2
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
  0.564
apm2
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
    
  0.554
ABCG11
ABC transporter G family member 11.
    
 0.554
CTRI78_v001014
USP domain-containing protein.
    
  0.551
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.