pfl5 protein (Colletotrichum trifolii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pfl5

Putative cell agglutination protein pfl5. (6989 aa)

Predicted Functional Partners:

CTRI78_v000136

0.913

CTRI78_v008644

0.613

cel74a-1

0.613

CTRI78_v001318

0.613

cel74a-0

0.613

CTRI78_v009023

0.612

CTRI78_v005563

0.612

ykoW

0.588

TUBA

0.536

TUB1

0.536

Your Current Organism:

Colletotrichum trifolii

NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTRI78_v000136	CTRI78_v001318	A0A4R8RT01	A0A4R8RT00	Uncharacterized protein.	Uncharacterized protein.	0.497
CTRI78_v000136	CTRI78_v008644	A0A4R8RT01	A0A4R8QT51	Uncharacterized protein.	Putative secreted protein.	0.497
CTRI78_v000136	cel74a-0	A0A4R8RT01	A0A4V3HWF9	Uncharacterized protein.	Xyloglucanase.	0.497
CTRI78_v000136	cel74a-1	A0A4R8RT01	A0A4R8RCN8	Uncharacterized protein.	Xyloglucanase.	0.497
CTRI78_v000136	pfl5	A0A4R8RT01	A0A4R8RHL9	Uncharacterized protein.	Putative cell agglutination protein pfl5.	0.913
CTRI78_v001318	CTRI78_v000136	A0A4R8RT00	A0A4R8RT01	Uncharacterized protein.	Uncharacterized protein.	0.497
CTRI78_v001318	pfl5	A0A4R8RT00	A0A4R8RHL9	Uncharacterized protein.	Putative cell agglutination protein pfl5.	0.613
CTRI78_v001318	ykoW	A0A4R8RT00	A0A4R8QAY4	Uncharacterized protein.	Signaling protein YkoW.	0.461
CTRI78_v005563	TUB1	A0A4R8REG8	A0A4R8RB52	WSC domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.444
CTRI78_v005563	TUBA	A0A4R8REG8	A0A4R8QJY2	WSC domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.444
CTRI78_v005563	pfl5	A0A4R8REG8	A0A4R8RHL9	WSC domain-containing protein.	Putative cell agglutination protein pfl5.	0.612
CTRI78_v008644	CTRI78_v000136	A0A4R8QT51	A0A4R8RT01	Putative secreted protein.	Uncharacterized protein.	0.497
CTRI78_v008644	pfl5	A0A4R8QT51	A0A4R8RHL9	Putative secreted protein.	Putative cell agglutination protein pfl5.	0.613
CTRI78_v008644	ykoW	A0A4R8QT51	A0A4R8QAY4	Putative secreted protein.	Signaling protein YkoW.	0.461
CTRI78_v009023	TUB1	A0A4R8QXJ5	A0A4R8RB52	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.444
CTRI78_v009023	TUBA	A0A4R8QXJ5	A0A4R8QJY2	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.444
CTRI78_v009023	pfl5	A0A4R8QXJ5	A0A4R8RHL9	Uncharacterized protein.	Putative cell agglutination protein pfl5.	0.612
TUB1	CTRI78_v005563	A0A4R8RB52	A0A4R8REG8	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	WSC domain-containing protein.	0.444
TUB1	CTRI78_v009023	A0A4R8RB52	A0A4R8QXJ5	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.444
TUB1	TUBA	A0A4R8RB52	A0A4R8QJY2	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.946