STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v004990Uncharacterized protein. (314 aa)    
Predicted Functional Partners:
CTRI78_v000136
Uncharacterized protein.
    
 0.618
crb3
Pre-rRNA-processing protein crb3/ipi3.
    
  0.592
CTRI78_v007497
Telo_bind domain-containing protein.
    
  0.548
CTRI78_v009023
Uncharacterized protein.
    
  0.545
CTRI78_v005563
WSC domain-containing protein.
    
  0.545
crp-79
Ubiquitin-60S ribosomal protein L40.
    
  0.537
taf5
Transcription initiation factor TFIID subunit 5.
    
  0.516
TAF12
Transcription initiation factor TFIID subunit 12.
    
  0.486
TRA1
Transcription-associated protein 1; Belongs to the PI3/PI4-kinase family.
    
  0.486
taf6
Transcription initiation factor TFIID subunit 6.
    
  0.485
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.