STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prp40Pre-mRNA-processing protein prp40. (876 aa)    
Predicted Functional Partners:
usp107
U1 snRNP-associated protein usp107.
   
 
 0.955
cef-1
Pre-mRNA-splicing factor cef-1.
   
   0.948
CTRI78_v004235
U1 small nuclear ribonucleoprotein 70 kDa-like protein.
    
 
 0.946
usp106
U1 snRNP-associated protein usp106.
   
 
 0.936
bbp-1
Branchpoint-bridging protein.
    
 
 0.931
U2af50
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.931
CTRI78_v008114
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 
 0.919
prp39
Pre-mRNA-processing factor 39.
    
 
 0.915
RSE1
Pre-mRNA-splicing factor RSE1.
  
 
 
 0.913
snu66
U4/U6.U5 tri-snRNP-associated protein snu66.
   
   0.911
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.