STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yanD-1Short chain dehydrogenase yanD. (339 aa)    
Predicted Functional Partners:
CTRI78_v002204
Putative oxidoreductase.
  
  
  0.705
OLE1
Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.
    
 0.608
DYR
Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.
   
 
  0.576
CTRI78_v004759
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
  0.546
CTRI78_v011239
Short-chain dehydrogenase TIC 32.
  
  
  0.534
Wwox-1
WW domain-containing oxidoreductase.
  
  
  0.512
CTRI78_v008335
Short-chain dehydrogenase TIC 32; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.508
CTRI78_v010947
Adrenodoxin-like protein.
   
  0.504
ymaE
Lactamase_B domain-containing protein.
   
  0.504
FDH1
S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
   
 
  0.491
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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