STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v003992Uncharacterized protein. (591 aa)    
Predicted Functional Partners:
nup-20
Protein transport protein sec13; Belongs to the WD repeat SEC13 family.
    
 0.976
SEH1
Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
    
 0.976
npr3
Nitrogen permease regulator 3.
    
 0.976
iml1
Vacuolar membrane-associated protein iml1.
    
 0.976
CTRI78_v000143
Putative RWD, RING finger and WD repeat-containing protein.
    
 0.976
CTRI78_v003259
Nitrogen permease regulator 2-like protein.
    
 0.976
SEA4
SEH-associated protein 4.
    
 0.976
Rraga
Ras-related GTP-binding protein A.
    
 0.948
imp1
Mitochondrial inner membrane protease subunit 1.
    
 0.943
mip1
Target of rapamycin complex 1 subunit mip1.
    
 0.790
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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