STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cwf14Pre-mRNA-splicing factor cwf14. (148 aa)    
Predicted Functional Partners:
clf1
Pre-mRNA-splicing factor clf1.
    
 0.999
ISY1
Pre-mRNA-splicing factor ISY1.
   
 0.999
prp45
Pre-mRNA-processing protein 45.
    
 0.999
AQR
Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.
    
  0.998
cyp10-0
Peptidyl-prolyl cis-trans isomerase E.
   
 0.998
cwc15
Pre-mRNA-splicing factor cwc15.
   
 
 0.992
prp46
Pre-mRNA-splicing factor prp46.
   
 
 0.991
cwf10
Pre-mRNA-splicing factor cwf10.
   
 
 0.991
cwc22
Pre-mRNA-splicing factor cwc22.
   
 
 0.991
sme1-1
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 
 0.990
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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