STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prp16Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (990 aa)    
Predicted Functional Partners:
prp17
Pre-mRNA-processing factor 17.
   
 0.999
SLU7
Pre-mRNA-splicing factor SLU7.
   
 0.998
CWC25
Pre-mRNA-splicing factor CWC25.
    
 0.996
cwf16
Pre-mRNA-splicing factor cwf16.
   
 0.996
cef-1
Pre-mRNA-splicing factor cef-1.
 
 
 0.992
brr2
Pre-mRNA-splicing factor brr2.
    
 
 0.991
prp19
Pre-mRNA-processing factor 19.
   
 0.990
cwf14
Pre-mRNA-splicing factor cwf14.
    
 0.990
Prpf8
Pre-mRNA-processing-splicing factor 8.
   
 
 0.988
U2af50
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.988
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.