STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sec18Vesicular-fusion protein sec18. (775 aa)    
Predicted Functional Partners:
CTRI78_v000466
Putative vesicular-fusion protein sec17-like protein.
   
 0.987
sly1
Protein sly1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.971
CTRI78_v003616
Synaptobrevin-like protein ykt6; Belongs to the synaptobrevin family.
    
 0.966
psy1
Syntaxin-like protein psy1.
    
 0.957
SSO2
Protein transport protein SSO2.
    
 0.957
pep12
Syntaxin pep12; Belongs to the syntaxin family.
   
 0.957
CTRI78_v009890
DUF2263 domain-containing protein.
   
 0.949
sec9
Protein transport protein sec9.
   
 
 0.948
CTRI78_v008502
Uncharacterized protein.
   
 0.946
sec22
Protein transport protein sec22; Belongs to the synaptobrevin family.
    
 0.936
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.