STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v002624LysM domain-containing protein. (810 aa)    
Predicted Functional Partners:
cox12
Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
   
 0.866
CTRI78_v012042
Uncharacterized protein.
   
 0.823
CTRI78_v009548
Uncharacterized protein.
   
 0.809
CTRI78_v008137
Cytochrome c oxidase subunit 6A; Belongs to the cytochrome c oxidase subunit 6A family.
   
 0.785
CTRI78_v007019
Cytochrome c oxidase subunit 6.
   
 0.760
CTRI78_v011142
Uncharacterized protein.
   
 0.734
CTRI78_v011141
Cytochrome c oxidase subunit 4.
   
 0.734
CTRI78_v010297
Cytochrome c oxidase polypeptide 5.
   
 0.730
qcr-8
Cytochrome b-c1 complex subunit 8.
   
  0.654
qcr-7
Cytochrome b-c1 complex subunit 7; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain; Belongs to the UQCRB/QCR7 family.
   
  0.615
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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