STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v000323SGNH_hydro domain-containing protein. (261 aa)    
Predicted Functional Partners:
Chordc1
Cysteine and histidine-rich domain-containing protein 1.
 
      0.567
CTRI78_v009960
Uncharacterized protein.
    
 0.489
CTRI78_v003546
Uncharacterized protein.
    
 0.489
CTRI78_v010018
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
   
 
  0.438
thyn1-1
Thymocyte nuclear protein 1.
     
 0.422
CTRI78_v007438
Uncharacterized protein.
     
 0.422
CTRI78_v010991
Putative RING finger protein.
    
  0.415
Zswim2
E3 ubiquitin-protein ligase Zswim2.
    
  0.415
swnN-0
Oxidoreductase swnN.
    
  0.415
CTRI78_v008728
Putative RING finger protein.
    
  0.415
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.