STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v005023Uncharacterized protein. (920 aa)    
Predicted Functional Partners:
RL25
60S ribosomal protein L25.
  
 0.996
rpl-5
60S ribosomal protein L5.
  
 0.996
rps3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
 0.996
rps20
40S ribosomal protein S20.
  
 0.996
rpl-7
60S ribosomal protein L7.
  
 0.996
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.995
RPS4
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
   
 0.995
crp-46
60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.
  
 0.995
RPS9
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
  
 0.995
RPL14A
60S ribosomal protein L14-A.
  
 0.995
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.