STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v000348Putative WD repeat-containing protein. (493 aa)    
Predicted Functional Partners:
CTRI78_v003130
60S ribosomal protein L10-A.
    
 
 0.990
AFT1-1
Acyl-CoA ligase AFT1-1.
 
      0.887
CTRI78_v011147
Uncharacterized protein.
   
  
 0.817
rrb1
Ribosome assembly protein rrb1.
   
  
 0.817
CTRI78_v009064
WW domain-containing protein.
    
 
 0.790
CTRI78_v007866
Uncharacterized protein.
    
 
 0.790
SIL1
Nucleotide exchange factor SIL1.
    
 
 0.790
fes-1
Hsp70 nucleotide exchange factor fes-1.
    
 
 0.790
CTRI78_v000586
54S ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.790
NMD3
60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.
   
  
 0.745
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.