STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v000129Regulator of cytoskeleton and endocytosis. (468 aa)    
Predicted Functional Partners:
chc1
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 
 0.664
LAS17
Proline-rich protein LAS17.
    
 
 0.597
pgaD
Putative endopolygalacturonase D.
    
 
 0.597
arp2
Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament.
    
 0.542
CTRI78_v006731
Uncharacterized protein.
    
 0.528
MYO1
Myosin-1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
0.528
coaA
Coactosin.
    
 
 0.526
dbnl-b
Drebrin-like protein B.
    
 
 0.526
Dnmbp
Dynamin-binding protein.
    
 
 0.511
scd1
Rho guanine nucleotide exchange factor scd1.
    
 
 0.511
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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