STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPB3DNA polymerase epsilon subunit C. (383 aa)    
Predicted Functional Partners:
ncb2
Negative cofactor 2 complex subunit beta.
   
 
 0.991
CTRI78_v009318
Nitrogen assimilation transcription factor nit-4.
   
 
 0.936
mot1
Putative helicase mot1.
    
 
 0.935
TBP
TATA-box-binding protein.
    
 
 0.922
tbpA-1
TATA-box-binding protein.
    
 
 0.922
sua7
Transcription initiation factor IIB.
    
 
 0.664
hap3
Transcriptional activator hap3.
    
 
 0.608
PIKA
Phosphatidylinositol 4-kinase PIK1a; Belongs to the PI3/PI4-kinase family.
 
      0.540
dpb4
DNA polymerase epsilon subunit D.
    
 
 0.472
CTRI78_v012001
Fork head protein-like protein 1.
    
  0.420
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.