STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v001186Uncharacterized protein. (285 aa)    
Predicted Functional Partners:
beta-Spec
Spectrin beta chain.
   
 0.599
MYO2
Myosin-2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
  0.580
tnr3
Thiamine pyrophosphokinase.
    
  0.569
CTRI78_v012238
Nudix hydrolase domain-containing protein.
    
  0.569
CTRI78_v012043
Putative CDP-alcohol phosphatidyltransferase class-I family protein.
    
  0.560
CTRI78_v012033
Putative cardiolipin synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
  0.560
rga4
Putative Rho-type GTPase-activating protein 4.
    
  0.558
ucp7
UBA domain-containing protein 7.
   
  0.554
rpn9
Putative 26S proteasome regulatory subunit rpn9.
    
  0.533
rpn6
Putative 26S proteasome regulatory subunit rpn6.
    
  0.531
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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