STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjoBPutative ATPase YjoB. (518 aa)    
Predicted Functional Partners:
NPL4
Nuclear protein localization protein 4.
   
 0.991
ubx1
UBX domain-containing protein 1.
   
 0.990
ubxn-1
UBX domain-containing protein 1.
    
 0.977
UFD1-0
Ubiquitin fusion degradation protein 1.
    
 0.974
HRD1
ERAD-associated E3 ubiquitin-protein ligase HRD1.
    
 0.970
CTRI78_v004885
Protein sel-1-like protein 1.
    
 0.970
Derl2
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.970
yod1
Ubiquitin thioesterase OTU1.
   
 0.967
UBX5
UBX domain-containing protein 5.
    
 0.964
pcb-4
Proteasome subunit beta.
   
 0.961
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.