STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sirRShort chain dehydrogenase sirR. (386 aa)    
Predicted Functional Partners:
ppe1
Serine/threonine-protein phosphatase.
    
  0.666
GDE1
Glycerophosphocholine phosphodiesterase GDE1.
    
 0.662
ekc1
Extragenic suppressor of kinetochore protein 1.
    
  0.634
nuc-2
Ankyrin repeat protein nuc-2.
    
 0.626
crp-79
Ubiquitin-60S ribosomal protein L40.
    
  0.620
rga4
Putative Rho-type GTPase-activating protein 4.
    
 0.605
elc1
Elongin-C; Belongs to the SKP1 family.
    
  0.602
rps3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
  0.600
cul3
Cullin-3; Belongs to the cullin family.
    
  0.595
CUL1
Cullin-1; Belongs to the cullin family.
    
  0.595
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.