STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP4-0Lipase 4. (576 aa)    
Predicted Functional Partners:
GDE1
Glycerophosphocholine phosphodiesterase GDE1.
    
 0.753
CTRI78_v003702
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
  0.720
nuc-2
Ankyrin repeat protein nuc-2.
    
 0.580
CTRI78_v009239
Extracellular protein.
    
  0.578
utp20
U3 small nucleolar RNA-associated protein 20.
   
  0.557
CTRI78_v006986
Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.
  
  
 
0.557
EMG1
Ribosomal RNA small subunit methyltransferase NEP1.
    
  0.539
CTRI78_v005521
CBF domain-containing protein.
    
  0.539
crp-15
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.539
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
    
  0.539
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.