STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v009114Uncharacterized protein. (247 aa)    
Predicted Functional Partners:
SPT5
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
   
 0.754
RPO26
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.747
RPC10
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
    
 0.747
RPB5
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.747
RPB8
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.746
RPB9
DNA-directed RNA polymerase II subunit RPB9.
    
 0.746
rpb4
DNA-directed RNA polymerase II subunit rpb4.
    
 0.746
RPB3
DNA-directed RNA polymerase II subunit RPB3.
    
 0.746
rpb10
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
 0.746
Rpb11
DNA-directed RNA polymerase II subunit RPB11.
    
 0.746
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.