STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v006852Meiotically up-regulated gene 157 protein. (695 aa)    
Predicted Functional Partners:
CTRI78_v000136
Uncharacterized protein.
    
  0.605
sfc4
Transcription factor tau subunit sfc4.
    
  0.477
sfc1
Transcription factor tau subunit sfc1.
    
  0.472
pmt3
Ubiquitin-like protein pmt3/smt3.
    
  0.455
lamA
Putative urea carboxylase.
    
  0.451
DUR1,2
Urea amidolyase.
    
  0.451
sec16
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
    
  0.443
CTRI78_v003797
Uncharacterized protein.
    
  0.437
CTRI78_v007236
Uncharacterized protein.
    
  0.431
CTRI78_v005413
GRIP domain-containing protein.
    
  0.421
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.