STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ASG1-1Activator of stress genes 1. (952 aa)    
Predicted Functional Partners:
crp-79
Ubiquitin-60S ribosomal protein L40.
    
 0.755
CTRI78_v005413
GRIP domain-containing protein.
    
 0.710
pteN
annotation not available
    
 0.684
CTRI78_v005050
Putative acyltransferase.
    
 0.667
CTRI78_v003705
Putative Xaa-Pro aminopeptidase.
 
  
   0.646
gsk3
Protein kinase gsk3; Belongs to the protein kinase superfamily.
    
  0.638
radR-1
Transcription factor radR.
    
  0.597
CTRI78_v011763
CIA30 domain-containing protein.
    
  0.597
ubi::crp-6
Ubiquitin-40S ribosomal protein S27a.
    
  0.597
CTRI78_v003732
Uncharacterized protein.
    
  0.597
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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