STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR68881.1Hydroxymethylpyrimidine pyrophosphatase. (274 aa)    
Predicted Functional Partners:
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
  
    0.866
SDR68850.1
Diacylglycerol kinase family enzyme.
 
  
  0.730
SDT16573.1
FAD/FMN-containing dehydrogenase.
    
  0.705
SDT22660.1
Phosphomannomutase.
  
 
 0.556
SDR82608.1
Mannose-6-phosphate isomerase, type 1.
  
 
 0.544
menB
1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
 
  
 0.472
SDS18351.1
FMN adenylyltransferase /riboflavin kinase; Belongs to the ribF family.
   
 0.472
SDS92982.1
Hypothetical protein.
 
    
0.451
SDS44901.1
Pyrimidine reductase, riboflavin biosynthesis.
     
 0.419
SDT20098.1
Phospho-glucose isomerase C-terminal SIS domain-containing protein.
  
  
  0.404
Your Current Organism:
Friedmanniella luteola
NCBI taxonomy Id: 546871
Other names: DSM 21741, F. luteola, Friedmanniella luteola Iwai et al. 2010, Friedmanniella sp. FA1, NBRC 104963, strain FA1
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