STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR69902.1Subtilase family protein; Belongs to the peptidase S8 family. (895 aa)    
Predicted Functional Partners:
SDT09986.1
Subtilase family protein.
  
  
  0.778
SDR96390.1
Conserved repeat domain-containing protein.
   
  0.630
SDR69890.1
Hypothetical protein.
       0.623
SDS02550.1
Hypothetical protein.
  
 
 0.492
SDR75671.1
Parallel beta-helix repeat (two copies).
  
  0.485
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.452
SDS13155.1
Cytochrome oxidase assembly protein ShyY1.
    
   0.434
SDT42985.1
Cytochrome oxidase assembly protein ShyY1.
    
   0.434
SDS42636.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
    0.426
SDR71219.1
Protein of unknown function.
   
  0.408
Your Current Organism:
Friedmanniella luteola
NCBI taxonomy Id: 546871
Other names: DSM 21741, F. luteola, Friedmanniella luteola Iwai et al. 2010, Friedmanniella sp. FA1, NBRC 104963, strain FA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.