Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDS40102.1Endoglucanase. (527 aa)    
Predicted Functional Partners:
SDR94458.1
Hypothetical protein.
   
 0.858
SDS31754.1
Hypothetical protein.
   
 0.858
SDT35569.1
Broad-specificity cellobiase.
    
 0.782
SDS95673.1
Glycosyl transferase family 2.
    
 0.746
SDT08374.1
Glycosyl transferase family 2.
    
 0.746
SDR84337.1
Hypothetical protein.
 
  
 0.724
SDS98621.1
Fibronectin type III domain-containing protein.
     
 0.699
SDS32533.1
MT0933-like antitoxin protein.
   
 0.667
SDS61381.1
Hypothetical protein.
   
 0.667
SDS53214.1
FG-GAP repeat-containing protein.
 
  
 0.658
Your Current Organism:
Friedmanniella luteola
NCBI taxonomy Id: 546871
Other names: DSM 21741, F. luteola, Friedmanniella luteola Iwai et al. 2010, Friedmanniella sp. FA1, NBRC 104963, strain FA1
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