STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS40519.1Hypothetical protein. (124 aa)    
Predicted Functional Partners:
SDT35608.1
Catechol 2,3-dioxygenase.
  
     0.775
SDS54375.1
Hypothetical protein; Manually curated.
  
     0.774
SDS45544.1
Hypothetical protein.
  
  
  0.616
SDS49638.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
  
     0.537
SDS40465.1
DNA topoisomerase IV subunit A.
       0.531
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
       0.528
SDS40370.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
       0.528
SDS40414.1
Carbonic anhydrase.
       0.528
SDS45460.1
Protein of unknown function.
  
     0.444
SDS06175.1
TIGR03083 family protein.
  
     0.401
Your Current Organism:
Friedmanniella luteola
NCBI taxonomy Id: 546871
Other names: DSM 21741, F. luteola, Friedmanniella luteola Iwai et al. 2010, Friedmanniella sp. FA1, NBRC 104963, strain FA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.