STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS91138.1LPXTG-site transpeptidase (sortase) family protein. (229 aa)    
Predicted Functional Partners:
SDS91103.1
Protein of unknown function.
 
     0.918
SDS91011.1
Anti-sigma-K factor RskA.
 
     0.843
SDT36277.1
Anti-sigma-K factor rskA.
 
     0.773
SDS87474.1
Protein of unknown function.
 
     0.720
SDR86589.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.707
SDS91048.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.611
SDT36259.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.485
SDS91215.1
[acyl-carrier-protein] S-malonyltransferase.
       0.479
fabH
3-oxoacyl-[acyl-carrier-protein] synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
       0.479
SDS91065.1
Uncaracterized surface protein containing fasciclin (FAS1) repeats.
       0.434
Your Current Organism:
Friedmanniella luteola
NCBI taxonomy Id: 546871
Other names: DSM 21741, F. luteola, Friedmanniella luteola Iwai et al. 2010, Friedmanniella sp. FA1, NBRC 104963, strain FA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.