STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT28421.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (228 aa)    
Predicted Functional Partners:
SDT28406.1
Histidine kinase.
 
  0.941
SDS82803.1
Signal transduction histidine kinase.
 
  0.865
SDT42354.1
Signal transduction histidine kinase.
 
  0.863
SDS82907.1
Signal transduction histidine kinase.
 
  0.861
SDS46514.1
Two-component system, NarL family, sensor histidine kinase UhpB.
 
  0.858
SDR71083.1
Signal transduction histidine kinase.
 
  0.857
SDS98037.1
PAS domain S-box-containing protein.
   
 0.850
SDS58688.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.849
SDT43477.1
Signal transduction histidine kinase.
  
  0.844
SDS56036.1
Histidine kinase.
  
  0.830
Your Current Organism:
Friedmanniella luteola
NCBI taxonomy Id: 546871
Other names: DSM 21741, F. luteola, Friedmanniella luteola Iwai et al. 2010, Friedmanniella sp. FA1, NBRC 104963, strain FA1
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