STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT29516.1Chloramphenicol-sensitive protein RarD. (304 aa)    
Predicted Functional Partners:
SDT29224.1
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
      0.640
SDS79458.1
Protein of unknown function.
      
 0.589
SDT29451.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.550
SDT29474.1
Nicotinamidase-related amidase.
       0.550
SDT29492.1
Purine-cytosine permease; Belongs to the purine-cytosine permease (2.A.39) family.
       0.550
SDT29207.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
       0.471
SDR76963.1
Inner membrane transporter RhtA.
      
 0.416
Your Current Organism:
Friedmanniella luteola
NCBI taxonomy Id: 546871
Other names: DSM 21741, F. luteola, Friedmanniella luteola Iwai et al. 2010, Friedmanniella sp. FA1, NBRC 104963, strain FA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.