STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT31332.1Transcriptional regulator, LacI family. (349 aa)    
Predicted Functional Partners:
SDT31295.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
   0.837
SDT31308.1
Rhamnulokinase.
 
 
   0.837
SDR71601.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
 
 
  0.787
SDS75179.1
Glutamate synthase (NADH) large subunit.
    
 
 0.749
SDT31276.1
L-rhamnose isomerase / sugar isomerase.
 
     0.616
SDT31356.1
Quinol monooxygenase YgiN.
       0.531
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.446
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
   0.446
SDT31740.1
Regulatory protein, lacI family.
  
     0.443
SDT22813.1
2-oxoisovalerate dehydrogenase E1 component.
    
   0.418
Your Current Organism:
Friedmanniella luteola
NCBI taxonomy Id: 546871
Other names: DSM 21741, F. luteola, Friedmanniella luteola Iwai et al. 2010, Friedmanniella sp. FA1, NBRC 104963, strain FA1
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