STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT42107.1Mannonate dehydratase. (403 aa)    
Predicted Functional Partners:
SDT42086.1
2-dehydro-3-deoxygluconokinase.
 
  
  0.969
SDT42140.1
6-phosphogluconate dehydrogenase (decarboxylating).
    
  0.836
SDS46156.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
 
  
  0.791
SDS61648.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 
0.788
SDS63510.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
 
  
  0.758
SDS01518.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
 
  
  0.751
SDT18871.1
Mannitol 2-dehydrogenase.
    
  0.709
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
    
 0.697
SDT32643.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
    
 0.697
SDT42122.1
L-idonate 5-dehydrogenase.
       0.664
Your Current Organism:
Friedmanniella luteola
NCBI taxonomy Id: 546871
Other names: DSM 21741, F. luteola, Friedmanniella luteola Iwai et al. 2010, Friedmanniella sp. FA1, NBRC 104963, strain FA1
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