STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU80546.1Signal transduction histidine kinase. (461 aa)    
Predicted Functional Partners:
SDU95960.1
Phage shock protein A (PspA) family protein.
 
 
 0.983
SDU80551.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
 
 0.979
SDU98661.1
PAS domain S-box-containing protein.
  
 0.948
SDU80541.1
Phage shock protein PspC (stress-responsive transcriptional regulator).
 
    0.912
SDU99618.1
Protein of unknown function.
 
    0.847
SDU80531.1
Phage shock protein PspC (stress-responsive transcriptional regulator).
 
    0.783
SDV01609.1
Putative membrane protein.
  
    0.748
SDU80124.1
Cyclic nucleotide-binding domain-containing protein.
  
 
 0.684
SDU80119.1
Thioredoxin reductase (NADPH).
  
 0.663
SDV02141.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
 0.647
Your Current Organism:
Friedmanniella sagamiharensis
NCBI taxonomy Id: 546874
Other names: DSM 21743, F. sagamiharensis, Friedmanniella sagamiharensis Iwai et al. 2010, Friedmanniella sp. FB2, NBRC 104965, strain FB2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.