Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDU80749.1 | SDU86085.1 | SAMN04488544_0250 | SAMN04488544_1101 | PPOX class probable F420-dependent enzyme. | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | 0.446 |
SDU81884.1 | SDU86085.1 | SAMN04488544_0462 | SAMN04488544_1101 | Protein of unknown function; Manually curated. | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | 0.524 |
SDU81884.1 | whiB | SAMN04488544_0462 | SAMN04488544_0458 | Protein of unknown function; Manually curated. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.597 |
SDU86077.1 | SDU86085.1 | SAMN04488544_1100 | SAMN04488544_1101 | ATP-dependent helicase HrpA. | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | 0.643 |
SDU86077.1 | SDU86091.1 | SAMN04488544_1100 | SAMN04488544_1102 | ATP-dependent helicase HrpA. | acyl-CoA thioesterase-2. | 0.589 |
SDU86077.1 | SDU86098.1 | SAMN04488544_1100 | SAMN04488544_1103 | ATP-dependent helicase HrpA. | Hypothetical protein. | 0.440 |
SDU86085.1 | SDU80749.1 | SAMN04488544_1101 | SAMN04488544_0250 | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | PPOX class probable F420-dependent enzyme. | 0.446 |
SDU86085.1 | SDU81884.1 | SAMN04488544_1101 | SAMN04488544_0462 | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | Protein of unknown function; Manually curated. | 0.524 |
SDU86085.1 | SDU86077.1 | SAMN04488544_1101 | SAMN04488544_1100 | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | ATP-dependent helicase HrpA. | 0.643 |
SDU86085.1 | SDU86091.1 | SAMN04488544_1101 | SAMN04488544_1102 | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | acyl-CoA thioesterase-2. | 0.628 |
SDU86085.1 | SDU86098.1 | SAMN04488544_1101 | SAMN04488544_1103 | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | Hypothetical protein. | 0.568 |
SDU86085.1 | SDU90611.1 | SAMN04488544_1101 | SAMN04488544_1763 | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | Putative hydrolase. | 0.463 |
SDU86085.1 | SDU94505.1 | SAMN04488544_1101 | SAMN04488544_2373 | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | Pyridoxamine 5'-phosphate oxidase. | 0.446 |
SDU86085.1 | prcA | SAMN04488544_1101 | SAMN04488544_1444 | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.448 |
SDU86085.1 | prcB | SAMN04488544_1101 | SAMN04488544_1445 | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | Proteasome endopeptidase complex, beta component Threonine peptidase. MEROPS family T01B; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.448 |
SDU86085.1 | whiB | SAMN04488544_1101 | SAMN04488544_0458 | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.479 |
SDU86091.1 | SDU86077.1 | SAMN04488544_1102 | SAMN04488544_1100 | acyl-CoA thioesterase-2. | ATP-dependent helicase HrpA. | 0.589 |
SDU86091.1 | SDU86085.1 | SAMN04488544_1102 | SAMN04488544_1101 | acyl-CoA thioesterase-2. | Predicted ATP-dependent carboligase, ATP-grasp superfamily. | 0.628 |
SDU86091.1 | SDU86098.1 | SAMN04488544_1102 | SAMN04488544_1103 | acyl-CoA thioesterase-2. | Hypothetical protein. | 0.762 |
SDU86098.1 | SDU86077.1 | SAMN04488544_1103 | SAMN04488544_1100 | Hypothetical protein. | ATP-dependent helicase HrpA. | 0.440 |
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