STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU86941.13-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit. (127 aa)    
Predicted Functional Partners:
SDU89238.1
Nitrite reductase (NADH) large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 0.952
SDU89222.1
MFS transporter, NNP family, nitrate/nitrite transporter.
 
 
  0.807
SDU94289.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
  
  
  0.802
SDV02318.1
Rieske [2Fe-2S] domain-containing protein.
 
 0.794
SDV05033.1
Thiosulfate sulfurtransferase.
  
  
  0.673
SDU89272.1
Glutamate synthase (NADH) large subunit.
   
 
 0.665
SDU86656.1
Thiosulfate/3-mercaptopyruvate sulfurtransferase.
  
  
  0.647
SDU89245.1
Assimilatory nitrate reductase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.637
SDU89230.1
Nitrite reductase (NADH) small subunit.
  
     0.542
SDV04766.1
Uroporphyrinogen III methyltransferase / synthase.
  
  
 0.482
Your Current Organism:
Friedmanniella sagamiharensis
NCBI taxonomy Id: 546874
Other names: DSM 21743, F. sagamiharensis, Friedmanniella sagamiharensis Iwai et al. 2010, Friedmanniella sp. FB2, NBRC 104965, strain FB2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.