STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU87057.1Hypothetical protein. (266 aa)    
Predicted Functional Partners:
SDU87052.1
Predicted dehydrogenase.
 
  
  0.852
SDU87044.1
Threonine dehydrogenase.
  
    0.775
SDU87036.1
Hypothetical protein.
       0.773
SDU87065.1
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.773
SDU85743.1
Trehalose utilization protein.
 
     0.746
SDV04099.1
Predicted dehydrogenase.
  
  
  0.740
SDU94437.1
Predicted dehydrogenase.
  
  
  0.736
SDU90300.1
Predicted dehydrogenase.
  
  
  0.706
SDV03587.1
Alpha-1,6-glucosidases, pullulanase-type; Belongs to the glycosyl hydrolase 13 family.
   
    0.674
SDV04103.1
Sugar phosphate isomerase/epimerase.
 
     0.666
Your Current Organism:
Friedmanniella sagamiharensis
NCBI taxonomy Id: 546874
Other names: DSM 21743, F. sagamiharensis, Friedmanniella sagamiharensis Iwai et al. 2010, Friedmanniella sp. FB2, NBRC 104965, strain FB2
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