STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU91922.1Uncharacterized zinc-type alcohol dehydrogenase-like protein. (347 aa)    
Predicted Functional Partners:
SDU79660.1
S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase.
  
 
0.773
SDV01641.1
S-(hydroxymethyl)mycothiol dehydrogenase.
  
 
0.771
SDU94847.1
Aldehyde dehydrogenase (NAD+).
   
 
  0.713
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
  0.710
SDU91745.1
Aldo/keto reductase.
   
 
 0.698
SDV03176.1
Glycerol kinase.
    
  0.692
SDU86863.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.682
SDU97417.1
Threonine dehydrogenase.
   
 
0.666
SDU91911.1
Predicted membrane protein.
       0.590
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.590
Your Current Organism:
Friedmanniella sagamiharensis
NCBI taxonomy Id: 546874
Other names: DSM 21743, F. sagamiharensis, Friedmanniella sagamiharensis Iwai et al. 2010, Friedmanniella sp. FB2, NBRC 104965, strain FB2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.