STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU98603.1Glycosyltransferase involved in cell wall bisynthesis. (394 aa)    
Predicted Functional Partners:
SDU98597.1
Glycosyltransferase family 9 (heptosyltransferase).
 
 
  0.878
SDU98608.1
Glycosyltransferase, GT2 family.
 
    0.767
SDU86206.1
Glycosyl transferase family 8.
   
  0.701
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.651
SDU98021.1
Maltooligosyl trehalose hydrolase.
   
 0.635
SDU98590.1
Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase.
       0.615
SDU90679.1
ATP-dependent DNA helicase, Rep family.
    
   0.581
SDU89524.1
Starch phosphorylase.
   
 0.512
SDU86714.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.507
SDU84260.1
Acyl carrier protein.
  
 
   0.498
Your Current Organism:
Friedmanniella sagamiharensis
NCBI taxonomy Id: 546874
Other names: DSM 21743, F. sagamiharensis, Friedmanniella sagamiharensis Iwai et al. 2010, Friedmanniella sp. FB2, NBRC 104965, strain FB2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.