STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDV02330.1Alanine racemase. (349 aa)    
Predicted Functional Partners:
SDV02335.1
Lipid II:glycine glycyltransferase (Peptidoglycan interpeptide bridge formation enzyme).
 
     0.966
SDU83621.1
L-alanine dehydrogenase; Belongs to the AlaDH/PNT family.
  
 
 0.782
SDU85391.1
Alanine dehydrogenase; Belongs to the AlaDH/PNT family.
  
 
 0.782
SDV01398.1
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases-containing protein.
  
     0.767
SDU85625.1
Predicted O-methyltransferase YrrM.
  
     0.725
SDU97346.1
Hypothetical protein.
  
     0.702
SDU80420.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE.
 
 
  0.678
SDU93500.1
Hypothetical protein.
  
     0.664
SDU81918.1
Phospho-glucose isomerase C-terminal SIS domain-containing protein.
  
     0.658
SDU85068.1
Flavin reductase like domain-containing protein.
  
    0.646
Your Current Organism:
Friedmanniella sagamiharensis
NCBI taxonomy Id: 546874
Other names: DSM 21743, F. sagamiharensis, Friedmanniella sagamiharensis Iwai et al. 2010, Friedmanniella sp. FB2, NBRC 104965, strain FB2
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