STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdhAKEGG: bth:BT3054 0. succinate dehydrogenase flavoprotein subunit K00239. (660 aa)    
Predicted Functional Partners:
EEF74763.1
Succinate dehydrogenase/fumarate reductase iron-sulfur subunit; KEGG: bth:BT3055 9.6e-127 succinate dehydrogenase iron-sulfur protein K00240; Psort location: Cytoplasmic, score: 8.96.
 
 0.999
sdhC
Succinate dehydrogenase cytochrome B subunit, b558 family; KEGG: bfs:BF4339 2.5e-96 fumarate reductase transmembrane cytochrome b subunit K00241; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.997
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 0.997
EEF77162.1
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.996
nuoD
Respiratory-chain NADH dehydrogenase, 49 Kd subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
  
 
 0.986
EEF75430.1
Putative indolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
  
 0.959
EEF76340.1
4Fe-4S binding domain protein; KEGG: eci:UTI89_C2486 1.4e-12 napF; ferredoxin-type protein: electron transfer K02572; Psort location: CytoplasmicMembrane, score: 9.46.
  
 0.942
argH
KEGG: bth:BT3733 1.2e-208 argininosuccinate lyase K01755; Psort location: Cytoplasmic, score: 8.96.
     
 0.898
EEF75786.1
Aminotransferase, class I/II; KEGG: bfs:BF1601 7.5e-198 putative aspartate aminotransferase K00812.
   
 
 0.892
EEF78071.1
Aminotransferase, class I/II; KEGG: bfr:BF0595 3.6e-191 aspartate aminotransferase K00812.
   
 
 0.892
Your Current Organism:
Bacteroides coprophilus
NCBI taxonomy Id: 547042
Other names: B. coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus CB42, Bacteroides coprophilus DSM 18228, Bacteroides coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus JCM 13818, Bacteroides coprophilus JCM 13818 = DSM 18228
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