STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF75137.1KEGG: ava:Ava_3763 4.4e-19 thioredoxin K01829; Psort location: Cytoplasmic, score: 9.26. (99 aa)    
Predicted Functional Partners:
trxB
KEGG: bfs:BF0952 3.2e-135 trxB; putative thioredoxin reductase K00384; Psort location: Cytoplasmic, score: 9.97.
 
 0.890
EEF75136.1
Putative membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.671
EEF75134.1
Glycerate kinase; KEGG: bth:BT1437 3.6e-72 glycerate kinase K00865; Belongs to the glycerate kinase type-1 family.
 
   
 0.655
EEF77364.1
Class II glutamine amidotransferase; KEGG: bth:BT0553 0. glutamate synthase, large subunit K00265.
   
 
 0.648
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.645
EEF75135.1
Exonuclease; KEGG: bth:BT1431 6.3e-59 DNA polymerase III epsilon subunit K02342; Psort location: Cytoplasmic, score: 8.96.
  
    0.616
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: bth:BT4263 1.5e-167 glyceraldehyde 3-phosphate dehydrogenase K00134; Psort location: Cytoplasmic, score: 9.97; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.598
EEF76480.1
Phosphoribulokinase/uridine kinase family protein; KEGG: bfs:BF4152 5.7e-232 putative phosphoribulose/uridine kinase K01868; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.596
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.582
groL
Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.563
Your Current Organism:
Bacteroides coprophilus
NCBI taxonomy Id: 547042
Other names: B. coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus CB42, Bacteroides coprophilus DSM 18228, Bacteroides coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus JCM 13818, Bacteroides coprophilus JCM 13818 = DSM 18228
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