STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF75573.1CHC2 zinc finger domain protein; KEGG: tbd:Tbd_2387 6.5e-11 DNA primase K02316; Psort location: Cytoplasmic, score: 8.96. (292 aa)    
Predicted Functional Partners:
traM
Conjugative transposon TraM protein.
 
     0.888
EEF75574.1
Hypothetical protein.
 
     0.862
traN
Conjugative transposon TraN protein.
 
    0.858
EEF75572.1
Hypothetical protein.
 
     0.849
EEF75577.1
Hypothetical protein.
       0.823
traK
Conjugative transposon TraK protein; Psort location: Cytoplasmic, score: 8.96.
       0.823
EEF75571.1
Hypothetical protein; KEGG: bam:Bamb_4258 2.3e-06 lysozyme K01185.
       0.746
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.672
EEF75580.1
Hypothetical protein.
       0.669
EEF76275.1
Relaxase/mobilization nuclease domain protein; Psort location: Cytoplasmic, score: 8.96.
 
    0.659
Your Current Organism:
Bacteroides coprophilus
NCBI taxonomy Id: 547042
Other names: B. coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus CB42, Bacteroides coprophilus DSM 18228, Bacteroides coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus JCM 13818, Bacteroides coprophilus JCM 13818 = DSM 18228
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.