STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF76504.1Hypothetical protein. (272 aa)    
Predicted Functional Partners:
EEF76503.1
Hypothetical protein.
       0.727
EEF76683.1
Hypothetical protein.
  
 
   0.589
EEF77167.1
SusD family protein.
  
     0.549
EEF77168.1
TonB-linked outer membrane protein, SusC/RagA family; KEGG: ava:Ava_3643 0.0032 Na-Ca exchanger/integrin-beta4 K01406; Psort location: OuterMembrane, score: 9.49.
  
     0.532
EEF74839.1
SusD family protein.
  
 
   0.507
EEF75557.1
SusD family protein.
  
 
   0.507
EEF78262.1
SusD family protein.
  
 
   0.491
EEF77158.1
SusD family protein.
  
 
   0.486
EEF76998.1
Psort location: OuterMembrane, score: 10.00.
  
     0.461
EEF74702.1
WD40-like protein; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.447
Your Current Organism:
Bacteroides coprophilus
NCBI taxonomy Id: 547042
Other names: B. coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus CB42, Bacteroides coprophilus DSM 18228, Bacteroides coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus JCM 13818, Bacteroides coprophilus JCM 13818 = DSM 18228
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.