STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF76744.1Sigma factor regulatory protein, FecR/PupR family. (330 aa)    
Predicted Functional Partners:
EEF76742.1
KEGG: chu:CHU_3562 3.8e-13 rpoE; RNA polymerase sigma-70 factor, ECF subfamily K00960; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.868
EEF78259.1
KEGG: chu:CHU_3562 4.2e-14 rpoE; RNA polymerase sigma-70 factor, ECF subfamily K00960; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.736
EEF76745.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49.
 
  
 0.731
EEF76746.1
SusD family protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.710
EEF76374.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49.
 
  
 0.699
EEF76375.1
Hypothetical protein.
  
  
 0.686
EEF78035.1
KEGG: chu:CHU_3562 1.8e-20 rpoE; RNA polymerase sigma-70 factor, ECF subfamily K00960; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.678
EEF76376.1
Secretin and TonB N terminus short domain protein.
 
  
 0.673
EEF76462.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
 
 
 0.663
EEF76373.1
SusD family protein.
  
     0.655
Your Current Organism:
Bacteroides coprophilus
NCBI taxonomy Id: 547042
Other names: B. coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus CB42, Bacteroides coprophilus DSM 18228, Bacteroides coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus JCM 13818, Bacteroides coprophilus JCM 13818 = DSM 18228
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