STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdhAKEGG: bfs:BF3409 3.0e-226 gdhB2; glutamate dehydrogenase K00260; Psort location: Cytoplasmic, score: 9.97; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (444 aa)    
Predicted Functional Partners:
EEF77364.1
Class II glutamine amidotransferase; KEGG: bth:BT0553 0. glutamate synthase, large subunit K00265.
  
 0.999
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.945
gltA
KEGG: bth:BT4310 0. NADPH-dependent glutamate synthase small chain K00266; Psort location: Cytoplasmic, score: 9.97.
  
 0.838
icd
Isocitrate dehydrogenase, NADP-dependent; KEGG: bfr:BF3754 1.1e-162 isocitrate dehydrogenase K00031; Psort location: Cytoplasmic, score: 9.97.
   
 0.813
cobB-2
Transcriptional regulator, Sir2 family; KEGG: bfr:BF4513 1.0e-99 putative nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase K01463; Psort location: Cytoplasmic, score: 8.96; Belongs to the sirtuin family. Class III subfamily.
   
 0.774
gcvP
KEGG: bfs:BF2079 0. putative glycine dehydrogenase [decarboxylating] K00282:K00283; Belongs to the GcvP family.
   
 0.764
lpdA
Dihydrolipoyl dehydrogenase; KEGG: bfr:BF0024 2.6e-181 dihydrolipoamide dehydrogenase K00382; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.762
EEF74782.1
2-oxoacid:acceptor oxidoreductase, alpha subunit; KEGG: bth:BT2836 5.0e-272 korA; 2-oxoglutarate synthase subunit korA K00174.
  
 
 0.741
EEF77352.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: bce:BC0791 1.6e-142 NADH dehydrogenase K00359; Psort location: Cytoplasmic, score: 9.97; Belongs to the sulfur carrier protein TusA family.
  
 
 0.729
EEF77353.1
Hypothetical protein.
  
 
 0.729
Your Current Organism:
Bacteroides coprophilus
NCBI taxonomy Id: 547042
Other names: B. coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus CB42, Bacteroides coprophilus DSM 18228, Bacteroides coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus JCM 13818, Bacteroides coprophilus JCM 13818 = DSM 18228
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