STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF77103.1Phospholipase, patatin family; KEGG: vfi:VF2159 2.3e-34 serine protease; Psort location: OuterMembrane, score: 9.49. (770 aa)    
Predicted Functional Partners:
yfiO
Outer membrane assembly lipoprotein YfiO.
 
 
 0.801
EEF77204.1
Hypothetical protein.
 
 
 0.723
EEF78146.1
PQQ enzyme repeat protein; KEGG: mth:MTH1485 3.8e-22 serine/threonine protein kinase related protein K00870.
 
 0.627
EEF76191.1
PQQ enzyme repeat protein; KEGG: mth:MTH1485 2.5e-28 serine/threonine protein kinase related protein K00870.
 
 0.618
EEF74613.1
Hypothetical protein.
  
     0.605
EEF76379.1
Hypothetical protein.
 
  
 0.561
EEF76404.1
Tetratricopeptide repeat protein; KEGG: reh:H16_A0376 4.3e-05 O-linked N-acetylglucosamine transferase OGT.
     
 0.553
EEF76325.1
Putative RIP metalloprotease RseP; KEGG: bfs:BF3491 1.0e-161 putative protease; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.530
EEF77636.1
Hypothetical protein.
  
     0.515
fabZ
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
  
 0.514
Your Current Organism:
Bacteroides coprophilus
NCBI taxonomy Id: 547042
Other names: B. coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus CB42, Bacteroides coprophilus DSM 18228, Bacteroides coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus JCM 13818, Bacteroides coprophilus JCM 13818 = DSM 18228
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