STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF77572.1DNA binding domain, excisionase family. (118 aa)    
Predicted Functional Partners:
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
     
 0.711
EEF77364.1
Class II glutamine amidotransferase; KEGG: bth:BT0553 0. glutamate synthase, large subunit K00265.
    
  0.676
EEF77573.1
Hypothetical protein.
       0.625
EEF77574.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.625
EEF77571.1
Single-strand binding family protein.
       0.613
EEF75499.1
Hypothetical protein.
  
     0.597
EEF76675.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.574
EEF76383.1
Hypothetical protein.
  
     0.546
EEF77746.1
Outer membrane insertion signal domain protein; Psort location: OuterMembrane, score: 9.49.
  
     0.534
EEF76548.1
Hypothetical protein; KEGG: sac:SACOL0346 1.5e-16 prophage L54a, N-6-adenine-methyltransferase K00571.
 
     0.507
Your Current Organism:
Bacteroides coprophilus
NCBI taxonomy Id: 547042
Other names: B. coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus CB42, Bacteroides coprophilus DSM 18228, Bacteroides coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus JCM 13818, Bacteroides coprophilus JCM 13818 = DSM 18228
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.