STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF78306.1Biotin-requiring enzyme; KEGG: bth:BT1688 1.8e-45 bccP; biotin carboxyl carrier protein (BCCP) K01606. (142 aa)    
Predicted Functional Partners:
EEF78081.1
Biotin-requiring enzyme; KEGG: bfr:BF2937 5.1e-286 pyruvate carboxylase subunit B K01960.
 
0.999
EEF78304.1
Carboxyl transferase domain protein; KEGG: bth:BT1686 3.7e-260 propionyl-CoA carboxylase beta chain K01966.
 
 0.995
EEF78307.1
Sodium ion-translocating decarboxylase, beta subunit; KEGG: bth:BT1689 5.2e-183 oxaloacetate decarboxylase beta chain K01572; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.992
EEF77452.1
Carboxyl transferase domain protein; KEGG: bfr:BF3531 4.8e-219 propionyl-CoA carboxylase beta chain K01966; Psort location: Cytoplasmic, score: 8.96.
 
 0.979
EEF76987.1
biotin--[acetyl-CoA-carboxylase] ligase; KEGG: bth:BT2238 2.1e-74 putative biotin--(acetyl-CoA carboxylase) synthetase K01947.
 
  
 0.959
EEF78082.1
Sodium ion-translocating decarboxylase, beta subunit; KEGG: bth:BT1696 5.0e-201 oxaloacetate decarboxylase beta chain K01572; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.956
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 0.914
EEF75269.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
   
  0.875
EEF78305.1
Sodium pump decarboxylase, gamma subunit.
    
  0.874
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.846
Your Current Organism:
Bacteroides coprophilus
NCBI taxonomy Id: 547042
Other names: B. coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus CB42, Bacteroides coprophilus DSM 18228, Bacteroides coprophilus DSM 18228 = JCM 13818, Bacteroides coprophilus JCM 13818, Bacteroides coprophilus JCM 13818 = DSM 18228
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