STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGG14343.1Putative permease; IMG reference gene:2506376880; PFAM: Sulfite exporter TauE/SafE; PFAM: protein of unknown function DUF81; SPTR: Putative uncharacterized protein; KEGG: sai:Saci_0324 hypothetical protein; COGs: COG0730 permease; InterPro IPR002781. (267 aa)    
Predicted Functional Partners:
AGG14344.1
t-RNA-binding domain-containing protein; IMG reference gene:2506376881; PFAM: Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; PFAM: t-RNA-binding domain-containing protein; SPTR: T-RNA-binding domain protein; KEGG: aae:aq_422 methionyl-tRNA synthetase beta subunit; COGs: COG0073 EMAP domain; InterPro IPR002547.
     
 0.777
AGG14346.1
Dihydropteroate synthase; IMG reference gene:2506376883; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PRIAM: Dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; SPTR: Dihydropteroate synthase; KEGG: hth:HTH_1666 dihydropteroate synthase; COGs: COG0294 Dihydropteroate synthase; InterPro IPR000489:IPR006390.
     
 0.565
dacA
TIGR00159 family protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
       0.558
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
       0.554
AGG15204.1
Na+/solute symporter; IMG reference gene:2506377796; PFAM: Na+/solute symporter; SPTR: Na+/solute symporter; KEGG: tvo:TVN1300 Na+/panthothenate symporter permease; COGs: COG0591 Na+/proline symporter; InterPro IPR001734.
  
    0.439
AGG15263.1
IMG reference gene:2506377858; PFAM: Major Facilitator Superfamily; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; KEGG: sso:SSO1863 multidrug ABC transporter; InterPro IPR011701.
  
     0.400
Your Current Organism:
Hydrogenobaculum sp. HO
NCBI taxonomy Id: 547144
Other names: H. sp. HO
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